--- title: 10 Best QuickBooks Apps for Shopify - ThriveDesk canonical: "https://www.thrivedesk.com/shopify-quickbooks-apps/" author: ThriveDesk description: "Shopify QuickBooks Apps integrate e-commerce & accounting, streamlining financial processes, increasing accuracy & efficiency, providing valuable insights." categories: [blog, best-shopify-apps] --- # Best Shopify QuickBooks Apps in 2026 Shopify QuickBooks Apps integrate e-commerce & accounting, streamlining financial processes, increasing accuracy & efficiency, providing valuable insights. [Zannatun Nime](https://www.thrivedesk.com/author/nime/) 4 min read February 13, 2023 ![Best Shopify QuickBooks Apps in 2026](https://www.thrivedesk.com/_astro/shopify-quickbooks-apps.BZEtbqY8_Z1VMtaO.webp) Shopify QuickBooks Apps are software tools that connect the popular e-commerce platform Shopify to the widely used accounting software QuickBooks. These apps help Shopify store owners manage their financial data more easily and save time by eliminating the need to type it in by hand. With the help of Shopify QuickBooks Apps, businesses can automatically import sales data, keep track of inventory levels, and manage their finances in one place. This integration makes it easier for store owners to manage their finances, monitor their sales, and stay organized. The apps are user-friendly, cost-effective, and can be customized to meet the specific needs of each business. They are a popular choice for Shopify store owners because they help to streamline financial processes, improve accuracy and efficiency, and give them valuable insights into how their business works. ## 10 Best QuickBooks Apps for Shopify ### QuickBooks Online Sync by Webgility, Inc. 4.9 (832) [Check current pricing](https://apps.shopify.com/ecc-quickbooks-integration-for-shopify) The best ecommerce accounting and inventory automation tool for QuickBooks Online is Webgility Online. By decreasing the amount of time you spend on manual data entry, our solutions enable you to expand and scale your organization. All of your sales channels and QuickBooks can handle and sync orders and inventory with ease, ensuring that your financial records are accurate. [View More](https://apps.shopify.com/ecc-quickbooks-integration-for-shopify) ### QuickBooks Bridge by Parex Technologies 4.8 (165) [Check current pricing](https://apps.shopify.com/quickbooks-bridge) Simple automated sales data syncing to QuickBooks Online with choices for individual orders OR summary sync. You may automatically export all of your orders, products, and customer information to QuickBooks using Individual Orders. You can choose to manually sync data to QuickBooks at your convenience or you can choose to do it automatically. Our program will make one entry with Summary Sync for each Shopify Payout. for each of the other payment options, and will produce one entry each day. [View More](https://apps.shopify.com/quickbooks-bridge) ### QuickBooks Enterprise Sync by Webgility, Inc. 4.9 (198) [Check current pricing](https://apps.shopify.com/ecc-cloud-quickbooks-online-integration) The best ecommerce accounting and inventory automation tool for QuickBooks Desktop is Webgility Desktop. By decreasing the amount of time you spend on manual data entry, our solutions enable you to expand and scale your organization. In order to ensure that your books are accurate, you may manage and sync orders, inventory, pricing, product listings, buy workflows, and 3PL/dropshipping duties across all of your sales channels and QuickBooks. [View More](https://apps.shopify.com/ecc-cloud-quickbooks-online-integration) ### QuickBooks Desktop by Parex Technologies 4.8 (27) [Check current pricing](https://apps.shopify.com/quickbooks-desktop) Easily automate the syncing of sales data to QuickBooks Desktop or Enterprise editions - Sync individual orders You may automatically export all of your orders, products, and customer information to QuickBooks using Individual Orders. You can choose to manually sync data to QuickBooks at your convenience or you can choose to do it automatically. Coming Soon - Synchronized Summary: Our program will generate one record with Summary Sync for each Shopify Payout and one entry every day for each of the other payment types. [View More](https://apps.shopify.com/quickbooks-desktop) ### QuickBooks, Xero sync ‑ Synder by CloudBusiness Inc 4.8 (193) [Check current pricing](https://apps.shopify.com/synder) Sync your Shopify store transactions in real time, along with all the relevant information (processing costs, taxes, discounts, gift cards, shipping, items, customers). The reconciliation procedure may be completed with just one click thanks to Synder, which also enables multi-currency and inventory syncing to your books. Setup simply takes 15 minutes! Why is Synder? links to external payment processors in daily or per-transaction modes (no duplicates) [View More](https://apps.shopify.com/synder) ### QuickBooks Online or Xero Sync by A2X Software Limited 4.9 (201) [Check current pricing](https://apps.shopify.com/a2x) Your Shopify payout data is transformed by A2X into summaries that are well-organized and completely reconcile in Xero or QuickBooks Online (QBO). To offer you a better understanding of how your store is truly operating, Shopify precisely categorizes every transaction - including sales, fees, taxes, gift cards, refunds, and more. Join the hundreds of CPAs, bookkeepers, and Shopify merchants who rely on A2X to reduce their monthly bookkeeping time, precisely track their taxes, and improve their financial visibility. [View More](https://apps.shopify.com/a2x) ### Xero or QuickBooks Sync by Link My Books 5(19) [Check current pricing](https://apps.shopify.com/linkmybooks) Link My Books organizes all the sales, refunds, and fees into a clear summary record in Xero or QuickBooks each time you receive a payment from Shopify. Every transaction is subject to a tax jurisdiction check, and the appropriate tax rates that you selected during setup are immediately applied. This one-click reconciliation is made possible by the fact that these summary invoices EXACTLY match the amount that Shopify put into your bank account. Spending just 15 minutes now will result in monthly savings of many hours. [View More](https://apps.shopify.com/linkmybooks) ### Bookkeep QuickBooks, Xero Sync by bookkeep.com Inc. 4.7 (33) [Check current pricing](https://apps.shopify.com/bookkeep-com-daily-summary-e-commerce) Users of Bookkeep can automatically create cost of goods sold, money deposits, and summaries of Shopify sales. Our technology provides a precise way to import Shopify’s financial data into accounting software like QuickBooks Online, Xero, and Sage Intacct. Historical imports and several currencies are also supported. Each time, it delivers accurate data that is free of duplicates or missing transactions. Never again will you need to spend time making manual entries or modifications. [View More](https://apps.shopify.com/bookkeep-com-daily-summary-e-commerce) ### QuickBooks & Xero Sync by taxomate 5 (7) [Check current pricing](https://apps.shopify.com/xero-taxomate) Taxomate automatically retrieves, processes, and posts journal entries to QuickBooks Online or Xero as well as Shopify payouts. Taxomate recognizes each payout that Shopify starts, loads the transactions, and creates a summary of the earnings, outlays, and other transactions. Additionally, you can choose which tax rates and accounts Taxomate should apply for each Shopify transaction type, or you may let us do it automatically. [View More](https://apps.shopify.com/xero-taxomate) ### Xero, QuickBooks or MYOB Sync by Amaka 4.2 (6) [Check current pricing](https://apps.shopify.com/xero-accounting-integration) ## Functioning A daily overview of your orders from the previous day from Shopify will sync into Xero, QuickBooks Online, or MYOB creating an invoice. You can choose from a variety of forms to create your ideal sales summary view. ## Quick Consolidation By comparing payouts received to sales and fees on Shopify, a reconciliation is performed. When the Shopify payout amount is reached, the integration will issue invoices to offer quick reconciliation possibilities. [View More](https://apps.shopify.com/xero-accounting-integration) ## Running the store behind the apps An app stack is only half of running a Shopify store. The other half is answering the people buying from you. The [ThriveDesk Shopify integration](https://www.thrivedesk.com/integrations/shopify/) brings each shopper’s orders into the conversation, so your team and Neo, the AI agent, can answer them in live chat from one place. More on this: [Ecommerce support](https://www.thrivedesk.com/industry/ecommerce/) · [All Shopify app roundups](https://www.thrivedesk.com/category/best-shopify-apps/) ## Related Shopify app roundups - [Best Shopify Deposit Apps in 2026](https://www.thrivedesk.com/shopify-deposit-apps/) - [Best Shopify Inventory Management Apps in 2026](https://www.thrivedesk.com/shopify-inventory-management-apps/) - [Best Shopify Quiz Apps in 2026](https://www.thrivedesk.com/shopify-quiz-apps/) - [Best Shopify Quote Apps in 2026](https://www.thrivedesk.com/shopify-quote-apps/) - [Best Shopify Referral Apps in 2026](https://www.thrivedesk.com/shopify-referral-apps/) - [Best Shopify Related Products Apps in 2026](https://www.thrivedesk.com/shopify-related-products-apps/) Helpful free tools [![Email marketing cost calculator preview](https://www.thrivedesk.com/_astro/esp_cost_calc.nIflywR0_Z282jyd.webp) Email Marketing Cost Calculator Calculate email marketing costs from list size, sending volume, and platform pricing. 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