--- title: 15 Best Payments Apps for Shopify - ThriveDesk canonical: "https://www.thrivedesk.com/shopify-payments-apps/" author: ThriveDesk description: "Shopify Payments Apps integrate with payment processing system, offering features such as automatic deposits, chargeback protection, & fraud detection." categories: [blog, best-shopify-apps] --- # Best Shopify Payments Apps in 2026 Shopify Payments Apps integrate with payment processing system, offering features such as automatic deposits, chargeback protection, & fraud detection. [Zannatun Nime](https://www.thrivedesk.com/author/nime/) 5 min read February 26, 2023 ![Best Shopify Payments Apps in 2026](https://www.thrivedesk.com/_astro/shopify-payments-apps.CTA2Hfuf_ZkMo7c.webp) Shopify Payments Apps offer a streamlined payment processing experience for merchants on the Shopify platform. These apps integrate with Shopify’s built-in payment processing system, allowing merchants to accept payments directly within their store. With features like automatic deposits, chargeback protection, and fraud detection, Shopify Payments Apps provide a secure and reliable payment solution for businesses of all sizes. Additionally, many of these apps offer customizable checkout options and support for multiple currencies, making it easier for merchants to sell to customers around the world. ## 14 Best Payments Apps for Shopify ### Seal Subscriptions℠ & Loyalty by Seal Subscriptions 4.9 (635) [Check current pricing](https://apps.shopify.com/seal-subscriptions) A subscription’s configuration has never been simpler! Create your first subscription rule, install the app, and start earning some sweet recurring income. With a fantastic support team at your disposal, the Seal Subscriptions app allows you complete control over your subscribers, items, promotions, churn rate, and cancellations. produced in Europe [View More](https://apps.shopify.com/seal-subscriptions) ### Timo Subscriptions by Globo 5 (38) [Check current pricing](https://apps.shopify.com/timo-subscriptions) Using the Shopify Subscription API, Timo Subscriptions is completely integrated with Shopify and is made to make managing recurring payments straightforward. This features a native checkout process, simple discount management, and more! It won’t take you long to install and set up Timo Subscriptions. With subscriptions on your product sites, you can increase client lifetime value and create as many subscription plans as you need. [View More](https://apps.shopify.com/timo-subscriptions) ### Afterpay On‑Site Messaging by Afterpay 2 (18) [Check current pricing](https://apps.shopify.com/afterpay-messaging) Without any coding knowledge, you can easily customize, preview, and publish on-site messages with the Afterpay On-Site Messaging App. Use specialized callouts to promote the availability of Afterpay as a payment option on your website to millions of highly engaged Millennial and Gen-Z customers in order to boost shopping frequency, basket sizes, and revenue. [View More](https://apps.shopify.com/afterpay-messaging) ### Split — Partial Payments by SpurIT UAB 4.6 (56) [Check current pricing](https://apps.shopify.com/split-partial-payments) Avoid losing clients who can’t pay for the complete order because there aren’t enough cash on their card, or who just want to split the cost with pals but can’t. Providing split payments to customers can significantly boost your sales. Let clients to make a single purchase using several payment methods, such as two credit cards or a credit card and PayPal. Let many people to split the cost of the entire order. Use our Installment Recurring Payments app to make installment payments. [View More](https://apps.shopify.com/split-partial-payments) ### UNumPay by Alchemative 4.9 (18) [Check current pricing](https://apps.shopify.com/unum-pay) With the many features available in our adaptable payment mediation platform, Unumpay enables you to gain a competitive edge over the market. You can also optimize your payments securely through one unified integration, select the best payment provider for your company, add filters, generate reports, and assess the performance of your payment gateway. [View More](https://apps.shopify.com/unum-pay) ### PayWhirl Subscription Payments by PayWhirl Inc. 4.8 (181) [Check current pricing](https://apps.shopify.com/paywhirl) The PAYWHIRL subscription platform makes it easy and efficient to create, launch, and manage subscriptions. You may quickly add subscription payment options to your current goods or services and manage when subscription orders are placed. With drag-and-drop app blocks, we effortlessly integrate with product pages, carts, and customer accounts. Although there is no need for scripting, we also provide developers with strong APIs, webhooks, and tag workflows. We are happy to help over the phone, via a live chat, or via email. [View More](https://apps.shopify.com/paywhirl) ### Kindly: Payment Reminder by ToastCode 4.6 (19) [Check current pricing](https://apps.shopify.com/kindly-payment-reminder) Lacking the time to follow up with consumers who still owe money? Kindly automatically emails clients who have outstanding orders a reminder. Simple customization of the email template, decision-making regarding the timing and number of reminders to send, commencement of automation, and presto—you start recovering money on autopilot! To restore the merchandise, remaining outstanding orders may be automatically canceled. Your ability to recover revenue is detailed in the report. Spend no more time waiting and begin right away for nothing! [View More](https://apps.shopify.com/kindly-payment-reminder) ### Webrex Subscriptions Payments by Webrex Studio 4.8 (44) [Check current pricing](https://apps.shopify.com/ws-subscriptions) To entice people to subscribe, create a subscription plan depending on their needs and give a percentage or flat discount. Adjust the subscription layout to reflect your brand’s design language. Create several email templates that are tailored to your language and your store’s branding. check all upcoming and skip order lists, as well as all active, paused, and cancelled contracts forecasting [View More](https://apps.shopify.com/ws-subscriptions) ### Custom Payment Icons by Kalis Media 5 (34) [Check current pricing](https://apps.shopify.com/custom-payment-icons) Managing payment icons is simple in your Shopify store. Change an icon’s attributes, such as size or color, by adding or removing it. Apply the templates that are available for each Shopify theme and adjust icon locations. VISA, Mastercard, PayPal, American Express, Apple & Google & Amazon Pay, Discover, Maestro, Klarna, JCB, iDEAL, and more are among the 500+ preconfigured symbols available for selection. No technical knowledge is required to utilize the program, which is simple to install. We offer first-rate assistance and 24-hour response times. [View More](https://apps.shopify.com/custom-payment-icons) ### Atobaraidotcom extension by トラストリング株式会社 None [Check current pricing](https://apps.shopify.com/atobaraidotcom-extension) Quick and straightforward order handling #Requirements 1. Have a service account with Atobaraidotcom. You must submit a separate application for the service on the official website before using the Atobaraidotcom service. 2. Install the Atobaraidotcom payment app in the same location so that orders may be correctly retrieved and managed. 3. The service from atobaraidotcom is only accessible in Japan. The Atobaraidotcom payment app is used by businesses, and this program offers some useful functions for order management. [View More](https://apps.shopify.com/atobaraidotcom-extension) ### Payster | Payment Reminder by Digismoothie 5 (20) [Check current pricing](https://apps.shopify.com/payster-payment-email-reminder) In the background, the software automatically keeps track of outstanding orders and abandoned checkouts, sending email notifications as a reminder. The order will be automatically canceled and the inventory will be replenished if the payment is not received within the allotted time frame. Payster is helpful for deferred (delayed) payments due in the future, local pickups to remind clients to pick up the order, and offline payment options including wire (bank) transfer, cash on delivery (COD), Boleto, Konbini, Paytm, Payoneer, PIX, or Oxxo. [View More](https://apps.shopify.com/payster-payment-email-reminder) ### Subscription App by Recurpay by Recurpay 5 (161) [Check current pricing](https://apps.shopify.com/recurpay-subscriptions) Powerful APIs to design any subscription flow in your custom mobile app, online store, or blog. Supports multicurrency subscriptions. \* Seamlessly migrate from other subscription apps with quick & easy live chat support. #Allows consumers to update, skip, postpone, and cancel subscriptions directly from the order history page #Supports both one-time and subscription purchases together #Receive recurring order #Offer discounts, free shipping on subscriptions [View More](https://apps.shopify.com/recurpay-subscriptions) ### FUGU ‑ Every Payment Counts by fugu 5 (10) [Check current pricing](https://apps.shopify.com/fugu-sensing-post-payment-risk) A multi-tiered fraud protection system is provided by FUGU, which analyzes consumer behavior after checkout, verifies customers, records interactions, and alerts on fraud. Businesses can either follow our risk advice or dynamically route specific orders to chargeback protection plans. In order to reduce payment churn, FUGU additionally offers a Promise To Pay feature that ensures shipment in the event of declined payments. Up until shipment, FUGU will continue to attempt to identify your customer before rejecting an order. [View More](https://apps.shopify.com/fugu-sensing-post-payment-risk) ### Panda PreOrder‑Split Payments by WHMCS Global Services 4.7 (25) [Check current pricing](https://apps.shopify.com/panda-preorder) The app automatically changes the “Add to cart” option to “Pre-Order” for items that are out of stock. By selecting the Pre-Order button and following the standard order process, your customer places an order. a new partial payment feature with automated payments was unveiled. [View More](https://apps.shopify.com/panda-preorder) ## Running the store behind the apps An app stack is only half of running a Shopify store. The other half is answering the people buying from you. The [ThriveDesk Shopify integration](https://www.thrivedesk.com/integrations/shopify/) brings each shopper’s orders into the conversation, so your team and Neo, the AI agent, can answer them in live chat from one place. More on this: [Ecommerce support](https://www.thrivedesk.com/industry/ecommerce/) · [All Shopify app roundups](https://www.thrivedesk.com/category/best-shopify-apps/) ## Related Shopify app roundups - [Best Shopify Subscription Box Apps in 2026](https://www.thrivedesk.com/shopify-subscription-box-apps/) - [Best Shopify Subscriptions Apps in 2026](https://www.thrivedesk.com/shopify-subscriptions-apps/) - [Best Shopify Loyalty Apps in 2026](https://www.thrivedesk.com/shopify-loyalty-apps/) - [Best Shopify Membership Apps in 2026](https://www.thrivedesk.com/shopify-membership-apps/) - [Best Shopify Monthly Subscription Apps in 2026](https://www.thrivedesk.com/shopify-monthly-subscription-apps/) - [Best Shopify Personalization Apps in 2026](https://www.thrivedesk.com/shopify-personalization-apps/) Helpful free tools [![SaaS payment gateway cost calculator preview](https://www.thrivedesk.com/_astro/SaaS-Payment-Calculator.BAIXCxOD_Sdp7M.webp) SaaS Payment Gateway Cost Calculator Estimate payment gateway costs and compare processing fees before choosing a billing stack. Try it free](https://www.thrivedesk.com/tools/saas-payment-gateway/)[![Helpdesk cost calculator preview](https://www.thrivedesk.com/_astro/og-helpdesk-cost-cal.Df-sCCCd_Z2q8PXW.webp) Helpdesk Cost Calculator Stop guessing. Compare real monthly costs for ThriveDesk, Freshdesk, Gorgias, Intercom, and more based on your team size and feature needs. Try it free](https://www.thrivedesk.com/tools/helpdesk-cost-calculator/) Share this article